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E-Commerce Accounting · Online Seller Accounting · Amazon Flipkart · India

E-Commerce Accounting complete accounting and GST compliance for every online seller in India.

Expert e-commerce accounting services in Mumbai and across India — accounting for Amazon, Flipkart, Meesho, Myntra, and other marketplace sellers; marketplace reconciliation; GST on e-commerce; TCS under GST; TDS on e-commerce; platform settlement reconciliation; and monthly accounting outsourcing for online sellers and D2C brands.

E-commerce accounting in India has unique complexity that standard bookkeeping approaches fail to address. An online seller on Amazon or Flipkart does not receive a simple payment for each sale — they receive a periodic settlement that nets sales against returns, marketplace commission, FBA charges, advertising spend, TDS deducted at source by the marketplace, and TCS collected by the marketplace under GST Section 52. Reconciling this settlement statement back to individual orders, correctly accounting for returns, and correctly claiming TCS as GST credit requires a specialised understanding of both e-commerce operations and GST law.

GST compliance for e-commerce sellers adds another layer of complexity. Section 52 of the CGST Act requires e-commerce operators (Amazon, Flipkart, Meesho) to collect Tax Collected at Source (TCS) at 1% of the net value of taxable supplies made through the platform. This TCS appears in the seller's GST credit ledger and must be claimed in GSTR-3B. Separately, Section 194O of the Income Tax Act requires the marketplace to deduct TDS at 1% on payments to sellers — this appears in Form 26AS and must be reconciled with the seller's income. Missing this reconciliation means either paying excess income tax or incorrectly claiming ITC.

Our e-commerce accounting practice covers monthly settlement reconciliation for all marketplaces — matching platform settlements to individual order-level data, accounting for returns and replacements, computing net income per channel, reconciling TCS in GSTR-2A with the GST credit ledger, reconciling TDS in Form 26AS with income, GST return filing (GSTR-1 and GSTR-3B) with correct reporting of e-commerce supplies, inventory accounting for FBA and self-fulfilled stock, and monthly MIS with channel-wise P&L for Amazon, Flipkart, and website-based sales.

Our E-Commerce Accounting Services

01

Marketplace Settlement Reconciliation

Monthly reconciliation of Amazon, Flipkart, Meesho, and Myntra settlements to order-level data.

02

TCS Reconciliation (GST)

Reconciliation of TCS collected by the marketplace in GSTR-2A with the GST portal credit ledger.

03

TDS Reconciliation (Income Tax)

Reconciliation of marketplace TDS under Section 194O in Form 26AS with income reported.

04

GST Return Filing for E-Commerce

GSTR-1 and GSTR-3B filing with correct reporting of e-commerce and direct sales separately.

05

Returns & Replacement Accounting

Accounting for customer returns, replacements, and marketplace-funded promotions.

06

Inventory Accounting

FBA stock accounting, self-fulfilled inventory, COGS calculation, and closing stock valuation.

07

Channel-Wise P&L

Monthly P&L by sales channel — Amazon, Flipkart, website, and retail — with margin analysis.

08

D2C Brand Accounting

Complete accounting for direct-to-consumer brands — Shopify, WooCommerce, and payment gateway reconciliation.

Our E-Commerce Accounting Workflow

1

Platform Access Setup

Connect to marketplace seller portals and accounting system for automated data extraction.

2

Settlement Reconciliation

Reconcile monthly settlements with order data, returns, commissions, and charges.

3

TCS & TDS Matching

Match TCS in GSTR-2A and TDS in Form 26AS with books and claim correctly.

4

GST Return Filing

Prepare and file GSTR-1 and GSTR-3B with correct e-commerce reporting.

5

MIS Delivery

Deliver channel-wise P&L, inventory report, and margin analysis by month-end.

Benefits of Specialist E-Commerce Accounting

Settlement reconciliation catches marketplace errors and overcharges
TCS reconciliation ensures correct GST credit is claimed each month
TDS reconciliation prevents excess income tax payment
Channel-wise P&L shows which platform is most profitable
Inventory accounting gives correct COGS and closing stock values
GST compliance specific to e-commerce — TCS, reverse charge, place of supply
Return accounting prevents revenue overstatement
D2C brand accounting covers Shopify, Razorpay, and payment gateways

Frequently Asked Questions

Under Section 52 of the CGST Act, e-commerce operators (Amazon, Flipkart, Meesho) must collect Tax Collected at Source (TCS) at 1% of the net taxable value of supplies made through their platform. This TCS appears in the seller's GSTR-2A and can be claimed as credit in GSTR-3B.

Section 194O requires e-commerce operators to deduct TDS at 1% on the gross amount of sales when making payment to sellers. This TDS appears in Form 26AS of the seller and is a credit against income tax payable at the time of annual income tax return filing.

Marketplace settlements net multiple items — sales, returns, commissions, FBA charges, advertising, TCS. Without reconciliation, the accounting system shows incorrect revenue, incorrect expenses, and incorrect GST liability. Errors compound month after month if not caught early.

Yes. E-commerce sellers must mandatorily register for GST regardless of turnover — there is no turnover threshold exemption for sellers who supply through an e-commerce operator. GST registration is required before listing on Amazon, Flipkart, or Meesho.

Yes. For D2C brands, we reconcile Shopify or WooCommerce sales data with payment gateway settlements (Razorpay, Paytm, PayU), account for returns and refunds, record advertising spend (Meta, Google), and prepare monthly channel-wise P&L and GST-ready reports.

Need E-Commerce Accounting?

From marketplace settlement reconciliation to TCS, TDS, GST, and channel P&L, our team handles the complete accounting for your online selling business.

Get E-Commerce Accounting or call +91 9819 000 511