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GST Audit · GSTR-9C · Annual Reconciliation · Section 65

GST Audit accurate reconciliation, zero surprises.

Comprehensive GST audit services in Mumbai and across India — GSTR-9C reconciliation statement, departmental audit support under Section 65, ITC audit, reverse charge audit, and annual return review for proprietors, partnerships, LLPs, and private limited companies.

GST audit is the examination of a registered taxpayer's accounts, records, and returns to verify the correctness of turnover declared, taxes paid, refunds claimed, and input tax credit availed. Under the CGST Act, a departmental audit under Section 65 can be conducted by the Commissioner or any authorised officer at the taxpayer's place of business or the department's office. Additionally, taxpayers with aggregate annual turnover above Rs 2 crore were earlier required to file a reconciliation statement in Form GSTR-9C certified by a Chartered Accountant.

A GST audit examines far more than return filings — it scrutinises the classification of goods and services under the correct HSN/SAC code, the applicability of exemptions and concessions, the correctness of place of supply determination, the reverse charge compliance, the ITC eligibility and utilisation, and the reconciliation of turnover with books of account and income tax returns. Discrepancies identified during audit can result in demand notices, penalties, and interest, making pre-audit preparation critical.

Our GST audit practice covers GSTR-9 annual return preparation, GSTR-9C reconciliation statement preparation and certification, internal GST health checks before departmental visits, ITC register review, reverse charge liability identification, HSN/SAC code correctness review, and representation before the audit officer. Whether you are preparing for a departmental audit or seeking an independent review of your GST compliance, our ICAI-registered Chartered Accountants provide a thorough, documented audit process.

Our GST Audit Services

01

GSTR-9 Annual Return

Preparation and filing of GSTR-9 annual return reconciling monthly/quarterly returns, ITC, and turnover for the full financial year.

02

GSTR-9C Reconciliation

Preparation and CA certification of GSTR-9C reconciliation statement between audited accounts and GST returns.

03

Departmental Audit Support

Full support during Section 65 departmental audits — document preparation, officer liaison, and reply to audit queries.

04

ITC Audit & Review

Detailed review of input tax credit availed vs eligible credit under Sections 16–21, including blocked credits and reversals.

05

Reverse Charge Audit

Identification and review of reverse charge mechanism liability on inward supplies from unregistered persons and notified services.

06

Place of Supply Review

Verification of place of supply determination for inter-state and intra-state transactions to confirm correct IGST/CGST/SGST treatment.

07

HSN/SAC Code Audit

Review of HSN and SAC code classification for goods and services to ensure correct tax rate application.

08

Pre-Audit Health Check

Internal compliance review before a departmental audit to identify and rectify gaps, reducing audit risk exposure.

Our GST Audit Workflow

1

Document Collection

Gather books of account, purchase and sales registers, GSTR-1, GSTR-3B, GSTR-2A/2B, and bank statements.

2

Return Reconciliation

Reconcile turnover and ITC in returns with audited financial statements and identify variances.

3

ITC & RCM Verification

Verify eligibility of ITC claimed and identify reverse charge liabilities not discharged during the year.

4

Audit Report Preparation

Prepare GSTR-9, GSTR-9C, or internal audit report with findings, observations, and recommendations.

5

Representation

Represent before the GST audit officer, provide explanations, and respond to observations in writing.

Benefits of a Professional GST Audit

Identify and recover ITC not claimed during the year
Rectify return errors before departmental scrutiny
Avoid penalties from incorrect HSN/SAC classification
Confirm correct reverse charge liability discharged
Reconcile GST turnover with income tax and books
Reduce departmental audit risk with clean documentation
GSTR-9C certification by ICAI-registered Chartered Accountant
Documented findings for board and management review

Frequently Asked Questions

A GST audit is the examination of a taxpayer's accounts, returns, and records to verify the correctness of turnover, taxes paid, ITC availed, and refunds claimed. It can be conducted internally or by the GST department under Section 65.

A departmental audit under Section 65 is conducted by the Commissioner of GST or an authorised officer. The taxpayer receives advance notice and must make books and documents available for verification.

GSTR-9C is a reconciliation statement between the audited annual accounts and the figures in the GSTR-9 annual return. It was mandatory for taxpayers with turnover above Rs 2 crore and must be certified by a CA or CMA.

Penalties can range from Rs 10,000 to 100% of the tax evaded, plus interest under Section 50 at 18% per annum. In cases of fraud, the penalty can equal the tax amount and prosecution proceedings may also be initiated.

A departmental audit typically concludes within 90 days of commencement, extendable by 90 more days. Complex audits or those requiring additional document verification may take longer.

Prepare for Your GST Audit

Whether you need GSTR-9C certification, ITC reconciliation, or full departmental audit support, our Chartered Accountants deliver a thorough, documented GST audit process.

Talk to Our GST Audit Team or call +91 9819 000 511